protein-protein docking tools

研究メモ

Rigid-body Docking †

• ZDOCK http://zlab.umassmed.edu/zdock/
• MEGADOCK http://www.bi.cs.titech.ac.jp/megadock/
• PIPER
• HEX
• LZerD
• PyDock
• SDOCK
• PatchDock
• RosettaDock

Reranking/Rescoring †

• ZRANK
• SPIDER
• INTEREVSCORE http://biodev.cea.fr/interevol/interevscore/

Backbone/Sidechain Refinement †

• FireDock
• FiberDock
• RDOCK
• EigenHEX

Affinity Prediction †

• PRODIGY: a web server for predicting the binding affinity of protein–protein complexes http://bioinformatics.oxfordjournals.org/content/early/2016/08/27/bioinformatics.btw514.short?rss=1