PyMOL

研究メモ

便利なリンク †

• http://www-cryst.bioc.cam.ac.uk/members/zbyszek/figures_pymol
• http://www.iam.u-tokyo.ac.jp/chem/IMCB-8ken-HP/Lab_Manuals/entori/2010/7/23_PyMOL_(PDB_viewer)_manyuaru.html
• http://d.hatena.ne.jp/biochem_fan/20130717/1374037184

コピペ用 †

set cartoon_oval_length, 0.9
set cartoon_oval_width, 0.2
set cartoon_rect_length, 0.7
set cartoon_rect_width, 0.3
set cartoon_loop_radius, 0.15
set antialias, 3
set ambient, .2
set ray_trace_gain, 0
set ray_trace_mode, 1
set ray_trace_color, black
bg_color white
set opaque_background, 1
ray

絵描き †

https://gyazo.com/b15b8575275cb6b1d74f883c6f902cd8 (1IGT)

as spheres
set ray_trace_gain, 0
set ray_trace_mode, 3
set ambient, .4
set ray_trace_color, black
set antialias, 3
ray

cartoonを細く †

set cartoon_oval_length, 0.6
set cartoon_oval_width, 0.15
set cartoon_rect_length, 0.6
set cartoon_rect_width, 0.25
set cartoon_loop_radius, 0.15

コマンド †

pdbidのchain XをHOGEという名前で選ぶ

select HOGE, (pdbid and chain X)

chain Xの430-440残基を選ぶ

select HOGE, (resi 430:440 and chain X)

透過png

set opaque_background, 0

白背景

bg_color white

ラベルのサイズ

set label_size, 20

ラベルの色

set label_color, red

ラベルの縁取り

set label_outline_color, black